Schmidt, Bertil: search on Z-Library

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1

[IEEE 2019 IEEE 21st International Conference on High Performance Computing and Communications; IEEE 17th International Conference on Smart City; IEEE 5th International Conference on Data Science and Systems (HPCC/SmartCity/DSS) - Zhangjiajie, China (2019.8.10-2019.8.12)] 2019 IEEE 21st International Conference on High Performance Computing and Communications; IEEE 17th International Conference on Smart City; IEEE 5th International Conference on Data Science and Systems (HPCC/SmartCity/DSS) - XLCS: A New Bit-Parallel Longest Common Subsequence Algorithm on Xeon Phi Clusters

Yin, Zekun, Zhang, Hao, Xu, Kai, Chan, Yuandong, Peng, Shaoliang, Wang, Xiaoning, Schmidt, Bertil, Liu, Weiguo

Year:

2019

Language:

english

File:

PDF, 228 KB

english, 2019

2

CUSHAW2-GPU: Empowering Faster Gapped Short-Read Alignment Using GPU Computing

Yongchao Liu,, Schmidt, Bertil

Journal:

IEEE Design and Test

Year:

2014

Language:

english

File:

PDF, 578 KB

english, 2014

3

Millimeter-scale and Billion-atom Reactive ForceField Simulation on Sunway Taihulight

Gao, Ping, Duan, Xiaohui, Zhang, Tingjian, Zhang, Meng, Schmidt, Bertil, Zhang, Xun, Sun, Hongliang, Zhang, Wusheng, Gan, Lin, Xue, Wei, Fu, Haohuan, Liu, Weiguo, Yang, Guangwen

Journal:

IEEE Transactions on Parallel and Distributed Systems

Year:

2020

File:

PDF, 4.04 MB

2020

4

The Sliced COO Format for Sparse Matrix-Vector Multiplication on CUDA-enabled GPUs

Dang, Hoang-Vu, Schmidt, Bertil

Journal:

Procedia Computer Science

Year:

2012

Language:

english

File:

PDF, 563 KB

english, 2012

5

Iterative sparse matrix–vector multiplication for accelerating the block Wiedemann algorithm over GF(2) on multi-graphics processing unit systems

Bertil Schmidt, Hans Aribowo, Hoang-Vu Dang

Journal:

Concurrency and Computation: Practice and Experience

Year:

2012

Language:

english

File:

PDF, 1.10 MB

english, 2012

6

[IEEE 2019 IEEE 21st International Conference on High Performance Computing and Communications; IEEE 17th International Conference on Smart City; IEEE 5th International Conference on Data Science and Systems (HPCC/SmartCity/DSS) - Zhangjiajie, China (2019.8.10-2019.8.12)] 2019 IEEE 21st International Conference on High Performance Computing and Communications; IEEE 17th International Conference on Smart City; IEEE 5th International Conference on Data Science and Systems (HPCC/SmartCity/DSS) - Efficient Parallel Sort on AVX-512-Based Multi-Core and Many-Core Architectures

Yin, Zekun, Zhang, Tianyu, Muller, Andre, Liu, Hui, Wei, Yanjie, Schmidt, Bertil, Liu, Weiguo

Year:

2019

Language:

english

File:

PDF, 1.16 MB

english, 2019

7

Parallel Programming || Unified Parallel C++

Schmidt, Bertil

Year:

2018

Language:

english

File:

PDF, 533 KB

english, 2018

8

Parallel RNA secondary structure prediction using stochastic context-free grammars

Tong Liu, Bertil Schmidt

Journal:

Concurrency and Computation: Practice and Experience

Year:

2005

Language:

english

File:

PDF, 308 KB

english, 2005

9

[IEEE 2020 IEEE International Parallel and Distributed Processing Symposium (IPDPS) - New Orleans, LA, USA (2020.5.18-2020.5.22)] 2020 IEEE International Parallel and Distributed Processing Symposium (IPDPS) - AnySeq: A High Performance Sequence Alignment Library based on Partial Evaluation

Muller, Andre, Schmidt, Bertil, Hildebrandt, Andreas, Membarth, Richard, Leisa, Roland, Kruse, Matthis, Hack, Sebastian

Year:

2020

File:

PDF, 217 KB

2020

10

GPU-accelerated exhaustive search for third-order epistatic interactions in case–control studies

González-Domínguez, Jorge, Schmidt, Bertil

Journal:

Journal of Computational Science

Year:

2015

Language:

english

File:

PDF, 750 KB

english, 2015

11

[IEEE 2015 IEEE 26th International Conference on Application-specific Systems, Architectures and Processors (ASAP) - Toronto, ON, Canada (2015.7.27-2015.7.29)] 2015 IEEE 26th International Conference on Application-specific Systems, Architectures and Processors (ASAP) - LightSpMV: Faster CSR-based sparse matrix-vector multiplication on CUDA-enabled GPUs

Liu, Yongchao, Schmidt, Bertil

Year:

2015

Language:

english

File:

PDF, 314 KB

english, 2015

12

Mapping of option pricing algorithms onto heterogeneous many-core architectures

Zhang, Shuai, Wang, Zhao, Peng, Ying, Schmidt, Bertil, Liu, Weiguo

Journal:

The Journal of Supercomputing

Year:

2017

Language:

english

File:

PDF, 727 KB

english, 2017

13

Directory of IEEE-AESS personnel

Weiguo Liu,, Schmidt, Bertil, Muller-Wittig, Wolfgang

Journal:

IEEE Aerospace and Electronic Systems Magazine

Year:

2005

Language:

english

File:

PDF, 332 KB

english, 2005

14

Accelerating molecular dynamics simulations using Graphics Processing Units with CUDA

Weiguo Liu, Bertil Schmidt, Gerrit Voss, Wolfgang Müller-Wittig

Journal:

Computer Physics Communications

Year:

2008

Language:

english

File:

PDF, 463 KB

english, 2008

15

LightSpMV: Faster CUDA-Compatible Sparse Matrix-Vector Multiplication Using Compressed Sparse Rows

Liu, Yongchao, Schmidt, Bertil

Journal:

Journal of Signal Processing Systems

Year:

2017

Language:

english

File:

PDF, 1.47 MB

english, 2017

16

Parallel Programming || Modern Architectures

Schmidt, Bertil

Year:

2018

Language:

english

File:

PDF, 827 KB

english, 2018

17

Parallel Programming || Advanced C++11 Multithreading

Schmidt, Bertil

Year:

2018

Language:

english

File:

PDF, 203 KB

english, 2018

18

Parallel Programming || OpenMP

Schmidt, Bertil

Year:

2018

Language:

english

File:

PDF, 620 KB

english, 2018

19

A big data approach to metagenomics for all-food-sequencing

Kobus, Robin, AbuÃn, JosÃ© M., MÃ¼ller, AndrÃ©, Hellmann, SÃ¶ren Lukas, Pichel, Juan C., Pena, TomÃ¡s F., Hildebrandt, Andreas, Hankeln, Thomas, Schmidt, Bertil

Journal:

BMC Bioinformatics

Year:

2020

Language:

english

File:

PDF, 1.04 MB

english, 2020

20

CUDA-enabled Sparse Matrix–Vector Multiplication on GPUs using atomic operations

Dang, Hoang-Vu, Schmidt, Bertil

Journal:

Parallel Computing

Year:

2013

Language:

english

File:

PDF, 1.24 MB

english, 2013

21

Predicting peptides binding to MHC class II molecules using multi-objective evolutionary algorithms

Menaka Rajapakse, Bertil Schmidt, Lin Feng, Vladimir Brusic

Journal:

BMC Bioinformatics

Year:

2007

Language:

english

File:

PDF, 378 KB

english, 2007

22

Accomplishments and Challenges in High Performance Computing for Computational Biology

Du, Zhihua, Lin, Feng, Schmidt, Bertil

Journal:

Current Bioinformatics

Year:

2006

Language:

english

File:

PDF, 244 KB

english, 2006

23

[IEEE 2014 IEEE International Conference On Cluster Computing (CLUSTER) - Madrid, Spain (2014.9.22-2014.9.26)] 2014 IEEE International Conference on Cluster Computing (CLUSTER) - UPC++ for bioinformatics: A case study using genome-wide association studies

Kassens, Jan C., Gonzalez-Dominguez, Jorge, Wienbrandt, Lars, Schmidt, Bertil

Year:

2014

Language:

english

File:

PDF, 403 KB

english, 2014

24

[Embedded Multi-Core Systems] Bioinformatics Volume 2 (High Performance Parallel Computer Architectures) || FPGA Acceleration of Seeded Similarity Searching

Schmidt, Bertil

Year:

2010

Language:

english

File:

PDF, 740 KB

english, 2010

25

parSRA: A framework for the parallel execution of short read aligners on compute clusters

González-Domínguez, Jorge, Hundt, Christian, Schmidt, Bertil

Journal:

Journal of Computational Science

Year:

2017

Language:

english

File:

PDF, 886 KB

english, 2017

26

[ACM Press the 2005 ACM/SIGDA 13th international symposium - Monterey, California, USA (2005.02.20-2005.02.22)] Proceedings of the 2005 ACM/SIGDA 13th international symposium on Field-programmable gate arrays - FPGA '05 - Hyper customized processors for bio-sequence database scanning on FPGAs

Oliver, Tim, Schmidt, Bertil, Maskell, Douglas

Year:

2005

Language:

english

File:

PDF, 298 KB

english, 2005

27

Parallel Pairwise Epistasis Detection on Heterogeneous Computing Architectures

Gonzalez-Dominguez, Jorge, Ramos, Sabela, Tourino, Juan, Schmidt, Bertil

Journal:

IEEE Transactions on Parallel and Distributed Systems

Year:

2015

Language:

english

File:

PDF, 1.59 MB

english, 2015

28

[Embedded Multi-Core Systems] Bioinformatics Volume 2 (High Performance Parallel Computer Architectures) || Seed-Based Parallel Protein Sequence Comparison Combining Multithreading, GPU, and FPGA Technologies

Schmidt, Bertil

Year:

2010

Language:

english

File:

PDF, 464 KB

english, 2010

29

CUDASW++ 3.0: accelerating Smith-Waterman protein database search by coupling CPU and GPU SIMD instructions

Yongchao Liu, Adrianto Wirawan, Bertil Schmidt

Journal:

BMC Bioinformatics

Year:

2013

Language:

english

File:

PDF, 451 KB

english, 2013

30

[IEEE 2007 IEEE International Parallel and Distributed Processing Symposium - Long Beach, CA, USA (2007.03.26-2007.03.30)] 2007 IEEE International Parallel and Distributed Processing Symposium - High Performance Database Searching with HMMer on FPGAs

Oliver, Tim, Yeow, Leow Yuan, Schmidt, Bertil

Year:

2007

Language:

english

File:

PDF, 295 KB

english, 2007

31

Parallelizing Epistasis Detection in GWAS on FPGA and GPU-acceleratedComputing Systems

Gonzalez, Jorge, Wienbrandt, Lars, Kassens, Jan Christian, Ellinghaus, David, Schimmler, Manfred, Schmidt, Bertil

Journal:

IEEE/ACM Transactions on Computational Biology and Bioinformatics

Year:

2015

Language:

english

File:

PDF, 7.19 MB

english, 2015

32

The MSc in Bioinformatics Program at NTU

Schmidt, Bertil, Chee, Keong-Kwoh

Journal:

Asia-Pacific Biotech News

Year:

2006

Language:

english

File:

PDF, 461 KB

english, 2006

33

SPIE Proceedings [SPIE Optical Science and Technology, the SPIE 49th Annual Meeting - Denver, CO (Monday 2 August 2004)] Applications of Digital Image Processing XXVII - Combining message-passing and inter-process communication in SMP-hybrid cluster for efficient parallel medical image analysis

Tan, Sean C. S., Tescher, Andrew G., Schmidt, Bertil

Year:

2004

Language:

english

File:

PDF, 174 KB

english, 2004

34

[Communications in Computer and Information Science] Contemporary Computing Volume 168 ||

Aluru, Srinivas, Bandyopadhyay, Sanghamitra, Catalyurek, Umit V., Dubhashi, Devdatt P., Jones, Phillip H., Parashar, Manish, Schmidt, Bertil

Year:

2011

Language:

english

File:

PDF, 12.17 MB

english, 2011

35

[IEEE 2008 2nd International Conference on Bioinformatics and Biomedical Engineering - Shanghai, China (2008.05.16-2008.05.18)] 2008 2nd International Conference on Bioinformatics and Biomedical Engineering - Applications of Heterogeneous Structure of Cell Broadband Engine Architecture for Biological Database Similarity Search

Hieu, Nim Tri, Keong, Kwoh Chee, Wirawan, Adrianto, Schmidt, Bertil

Year:

2008

Language:

english

File:

PDF, 335 KB

english, 2008

36

High-speed exhaustive 3-locus interaction epistasis analysis on FPGAs

Kässens, Jan Christian, Wienbrandt, Lars, González-Domínguez, Jorge, Schmidt, Bertil, Schimmler, Manfred

Journal:

Journal of Computational Science

Year:

2015

Language:

english

File:

PDF, 502 KB

english, 2015

37

ν-net

Winther, Hinrich B., Hundt, Christian, Schmidt, Bertil, Czerner, Christoph, Bauersachs, Johann, Wacker, Frank, Vogel-Claussen, Jens

Journal:

Journal of the American College of Cardiology: Cardiovascular Imaging

Year:

2018

Language:

english

File:

PDF, 575 KB

english, 2018

38

Reference Module in Life Sciences || Dedicated Bioinformatics Analysis Hardware

Schmidt, Bertil

Year:

2018

Language:

english

File:

PDF, 204 KB

english, 2018

39

Fourth Workshop on using Emerging Parallel Architectures

Schmidt, Bertil, Maskell, Douglas

Journal:

Procedia Computer Science

Year:

2012

Language:

english

File:

PDF, 163 KB

english, 2012

40

[Communications in Computer and Information Science] Contemporary Computing Volume 168 || GOREWEB Framework for Goal Oriented Requirements Engineering of Web Applications

Aluru, Srinivas, Bandyopadhyay, Sanghamitra, Catalyurek, Umit V., Dubhashi, Devdatt P., Jones, Phillip H., Parashar, Manish, Schmidt, Bertil

Year:

2011

Language:

english

File:

PDF, 390 KB

english, 2011

41

Accelerating Bioinformatics Applications via Emerging Parallel Computing Systems

Gomez-Pulido, Juan A., Schmidt, Bertil, Feng, Wu-chun

Journal:

IEEE/ACM Transactions on Computational Biology and Bioinformatics

Year:

2015

File:

PDF, 89 KB

2015

42

A computational method for studying the relation between alternative splicing and DNA methylation

Zheng, Zejun, Wei, Xiaona, Hildebrandt, Andreas, Schmidt, Bertil

Journal:

Nucleic Acids Research

Year:

2016

Language:

english

File:

PDF, 8.25 MB

english, 2016

43

MSAProbs-MPI: Parallel Multiple Sequence Aligner for Distributed-Memory Systems

González-Domínguez, Jorge, Liu, Yongchao, Touriño, Juan, Schmidt, Bertil

Journal:

Year:

2016

Language:

english

File:

PDF, 66 KB

english, 2016

44

[IEEE 2016 IEEE 27th International Conference on Application-specific Systems, Architectures and Processors (ASAP) - London, United Kingdom (2016.7.6-2016.7.8)] 2016 IEEE 27th International Conference on Application-specific Systems, Architectures and Processors (ASAP) - Combining GPU and FPGA technology for efficient exhaustive interaction analysis in GWAS

Kassens, Jan Christian, Wienbrandt, Lars, Schimmler, Manfred, Gonzalez-Dominguez, Jorge, Schmidt, Bertil

Year:

2016

Language:

english

File:

PDF, 433 KB

english, 2016

45

[ACM Press the 47th International Conference - Eugene, OR, USA (2018.08.13-2018.08.16)] Proceedings of the 47th International Conference on Parallel Processing - ICPP 2018 - Massively Parallel Huffman Decoding on GPUs

Weißenberger, André, Schmidt, Bertil

Year:

2018

Language:

english

File:

PDF, 884 KB

english, 2018

46

Parallel mutual information estimation for inferring gene regulatory networks on GPUs

Haixiang Shi, Bertil Schmidt, Weiguo Liu, Wolfgang Müller-Wittig

Journal:

BMC Research Notes

Year:

2011

Language:

english

File:

PDF, 410 KB

english, 2011

47

[IEEE 2011 IEEE 17th International Conference on Parallel and Distributed Systems (ICPADS) - Tainan, Taiwan (2011.12.7-2011.12.9)] 2011 IEEE 17th International Conference on Parallel and Distributed Systems - Mapping of BLASTP Algorithm onto GPU Clusters

Liu, Weiguo, Schmidt, Bertil, Liu, Yongchao, Voss, Gerrit, Mueller-Wittig, Wolfgang

Year:

2011

Language:

english

File:

PDF, 224 KB

english, 2011

48

CUDA-BLASTP: Accelerating BLASTP on CUDA-Enabled Graphics Hardware

Weiguo Liu,, Schmidt, Bertil, Muller-Wittig, Wolfgang

Journal:

IEEE/ACM Transactions on Computational Biology and Bioinformatics

Year:

2011

Language:

english

File:

PDF, 1.09 MB

english, 2011

49

[IEEE 13th IEEE International Conference on Embedded and Real-Time Computing Systems and Applications (RTCSA 2007) - Daegu, Korea (2007.08.21-2007.08.24)] 13th IEEE International Conference on Embedded and Real-Time Computing Systems and Applications (RTCSA 2007) - Fast Schedulability Analysis Using Commodity Graphics Hardware

Feng, Jimin, Chakraborty, Samarjit, Schmidt, Bertil, Liu, Weiguo, Bordoloi, Unmesh D.

Year:

2007

Language:

english

File:

PDF, 211 KB

english, 2007

50

[IEEE 2017 IEEE International Conference on Cluster Computing (CLUSTER) - Honolulu, HI, USA (2017.9.5-2017.9.8)] 2017 IEEE International Conference on Cluster Computing (CLUSTER) - S-Aligner: Ultrascalable Read Mapping on Sunway Taihu Light

Duan, Xiaohui, Xu, Kai, Chan, Yuandong, Hundt, Christian, Schmidt, Bertil, Balaji, Pavan, Liu, Weiguo

Year:

2017

Language:

english

File:

PDF, 438 KB

english, 2017

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